Prepare Junke peak call region 02

Decompress files

Set environment

Code

source ../run_config_project.sh
show_env

You are working on             Duke Server: HARDAC
BASE DIRECTORY (FD_BASE):      /data/reddylab/Kuei
REPO DIRECTORY (FD_REPO):      /data/reddylab/Kuei/repo
WORK DIRECTORY (FD_WORK):      /data/reddylab/Kuei/work
DATA DIRECTORY (FD_DATA):      /data/reddylab/Kuei/data
CONTAINER DIR. (FD_SING):      /data/reddylab/Kuei/container

You are working with           ENCODE FCC
PATH OF PROJECT (FD_PRJ):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC
PROJECT RESULTS (FD_RES):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/results
PROJECT SCRIPTS (FD_EXE):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/scripts
PROJECT DATA    (FD_DAT):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data
PROJECT NOTE    (FD_NBK):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/notebooks
PROJECT DOCS    (FD_DOC):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/docs
PROJECT LOG     (FD_LOG):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/log
PROJECT APP     (FD_APP):      
PROJECT REF     (FD_REF):      /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/references
PROJECT IMAGE   (FP_PRJ_SIF):  /data/reddylab/Kuei/container/project/singularity_proj_encode_fcc.sif

Preview

Code

FD_INP=${FD_DAT}/processed/fcc_enhancer_Junke_zscore_240611
ls ${FD_INP}/*zip | xargs -n 1 basename

ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib.zip
eSTARR_seq.zip
LentiMPRA_DNA_filtering_avg_DNA_lib_count_10.zip
TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10.zip
TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10.zip
TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10.zip
WHG_STARR_TR.zip

Execute

Code

### init: input files
FD_INP=${FD_DAT}/processed/fcc_enhancer_Junke_zscore_240611
FP_INPS=($(ls ${FD_INP}/*zip))

### init: output folder
FD_OUT=${FD_DAT}/processed/fcc_enhancer_Junke_zscore_240611/decompressed
rm -rf ${FD_OUT}

### loop and decompress
for FP_INP in ${FP_INPS[@]}; do
    echo ${FP_INP}
    unzip -o ${FP_INP} -d ${FD_OUT}
    echo
done

### remove MAC folder
rm -rf ${FD_OUT}/__MACOSX

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/.DS_Store  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/._.DS_Store  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/bin_level/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak/merged_enhancer_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak/merged_repressor_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/bin_level/bin_level_all_result.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/bin_level/all_bin_tested_in_both_orientations.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/eSTARR_seq.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/eSTARR_seq.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._eSTARR_seq  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/element_level/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/neg_ctrl.pdf  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/merged_peak/merged_enhancer_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/merged_peak/merged_repressor_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/element_level/all_element_tested_in_both_orientations.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/eSTARR_seq/element_level/element_level_all_result.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._LentiMPRA_DNA_filtering_avg_DNA_lib_count_10  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/element_level/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl.pdf  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/element_level/all_element_tested_in_both_orientations.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/LentiMPRA_DNA_filtering_avg_DNA_lib_count_10/element_level/element_level_all_result.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/element_level/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl.pdf  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/element_level/element_level_all_result.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/element_level/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl.pdf  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peak_orientation_independent.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/element_level/all_element_tested_in_both_orientations.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10/element_level/element_level_all_result.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/element_level/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/annotated_v4/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/neg_ctrl.pdf  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10/element_level/element_level_all_result.bed.gz  

/data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/WHG_STARR_TR.zip
Archive:  /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/WHG_STARR_TR.zip
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/._WHG_STARR_TR  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/.DS_Store  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/__MACOSX/WHG_STARR_TR/._.DS_Store  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/neg_ctrl_region.txt  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/merged_peak/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/bin_level/
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/.ipynb_checkpoints/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/merged_peak/merged_repressor_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/merged_peak/merged_enhancer_peaks_in_either_orientation.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/merged_peak/merged_enhancer_peak_orientation_independent.bed.gz  
   creating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/merged_peak/.ipynb_checkpoints/
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/bin_level/bin_level_all_result.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/bin_level/all_bin_tested_in_both_orientations.bed.gz  
  inflating: /data/reddylab/Kuei/repo/Proj_ENCODE_FCC/data/processed/fcc_enhancer_Junke_zscore_240611/decompressed/WHG_STARR_TR/.ipynb_checkpoints/annotated-checkpoint.out  
error: invalid zip file with overlapped components (possible zip bomb)

Review

Code

ls ${FD_OUT}

ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_
eSTARR_seq
LentiMPRA_DNA_filtering_avg_DNA_lib_count_10
TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10
TilingMPRA_ENCSR394HXI_DNA_filtering_avg_DNA_lib_count_10
TilingMPRA_ENCSR917SFD_DNA_filtering_avg_DNA_lib_count_10
WHG_STARR_TR

Code

ls ${FD_OUT}/eSTARR_seq

element_level  merged_peak  neg_ctrl.pdf  neg_ctrl_region.txt

Code

ls ${FD_OUT}/eSTARR_seq/merged_peak

merged_enhancer_peak_orientation_independent.bed.gz
merged_enhancer_peaks_in_either_orientation.bed.gz
merged_repressor_peak_orientation_independent.bed.gz
merged_repressor_peaks_in_either_orientation.bed.gz

Code

ls ${FD_OUT}/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10

element_level  merged_peak  neg_ctrl.pdf  neg_ctrl_region.txt

Code

ls ${FD_OUT}/TilingMPRA_ENCSR363XER_DNA_filtering_avg_DNA_lib_count_10/merged_peak

merged_enhancer_peaks_in_either_orientation.bed.gz
merged_repressor_peaks_in_either_orientation.bed.gz

Code

ls ${FD_OUT}/ATAC_STARR_seq_100bp_genomic_bin_in_ATAC_seq_peak_cpm_20_avg_DNA_lib_/merged_peak

merged_enhancer_peak_orientation_independent.bed.gz
merged_enhancer_peaks_in_either_orientation.bed.gz
merged_repressor_peak_orientation_independent.bed.gz
merged_repressor_peaks_in_either_orientation.bed.gz