03 Reference Files

Reference files

Description

  • encode_chipseq_flagship
  • encode_chipseq_histone
  • encode_chipseq_subset
  • encode_chromatin_states
  • encode_crispri_hcrff
  • encode_e2g_benchmark
  • encode_e2g_prediction
  • encode_open_chromatin
  • encode_rnaseq
  • genome_gene
  • genome_tss
  • genome_cres
    • collecting studied enhancers and regulatory regions, including:
      • GATA1
      • HDAC6
      • MYC/PVT1
      • FADS
      • Locus control region
      • LMO2 enhancers
  • fcc_peak_call_atac
  • fcc_peak_call_cres
  • fcc_trackhub_JinWoo
  • TF_modules_Shannon

Summary

PROJECT/reference
├── encode_chipseq_flagship
├── encode_chipseq_histone
├── encode_chipseq_subset
├── encode_chromatin_states
├── encode_crispri_hcrff
├── encode_e2g_benchmark
├── encode_e2g_prediction
├── encode_open_chromatin
├── encode_rnaseq
├── genome_tss
├── genome_cres
├── fcc_peak_call_atac
├── fcc_peak_call_cres
├── fcc_trackhub_JinWoo
├── hic...
└── TF_modules_Shannon

Detailed

PROJECT/reference
├── encode_chipseq_flagship
│
├── encode_chipseq_subset
│
├── encode_open_chromatin
│
├── fcc_trackhub_JinWoo
│   ├── K562_TSS_selected_by_higest_Pol2_TSS_sig.out
│   └── trackhub.txt
│
└── fcc_astarr_macs